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0.1.171

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guanjihuan 2025-03-24 04:37:54 +08:00
parent 7176bc5d57
commit 0d5c72dc1f
3 changed files with 18 additions and 11 deletions
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2
PyPI/setup.cfg
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@ -1,7 +1,7 @@
[metadata] [metadata]
# replace with your username: # replace with your username:
name = guan name = guan
version = 0.1.170 version = 0.1.171
author = guanjihuan author = guanjihuan
author_email = guanjihuan@163.com author_email = guanjihuan@163.com
description = An open source python package description = An open source python package

2
PyPI/src/guan.egg-info/PKG-INFO
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@ -1,6 +1,6 @@
Metadata-Version: 2.4 Metadata-Version: 2.4
Name: guan Name: guan
Version: 0.1.170 Version: 0.1.171
Summary: An open source python package Summary: An open source python package
Home-page: https://py.guanjihuan.com Home-page: https://py.guanjihuan.com
Author: guanjihuan Author: guanjihuan

25
PyPI/src/guan/file_reading_and_writing.py
View File

@ -244,11 +244,16 @@ def write_two_dimensional_data_without_xy_array_and_without_opening_file(matrix,
f.write('\n') f.write('\n')
# 创建一个sh文件用于提交任务（PBS） # 创建一个sh文件用于提交任务（PBS）
def make_sh_file_for_qsub(sh_filename='a', command_line='python a.py', cpu_num=1, task_name='task', cd_dir=0): def make_sh_file_for_qsub(sh_filename='a', command_line='python a.py', cpu_num=1, task_name='task', cd_dir=0, pbs_q=0, queue_name='bigmem', specific_node=0, node_name='node50.cluster'):
sh_content = \ sh_content = \
'#!/bin/sh\n' \ '#!/bin/sh\n' \
+'#PBS -N '+task_name+'\n' \ +f'#PBS -N {task_name}\n'
+'#PBS -l nodes=1:ppn='+str(cpu_num)+'\n' if pbs_q==1:
sh_content += f'#PBS -q {queue_name}\n'
if specific_node==0:
sh_content += f'#PBS -l nodes=1:ppn={cpu_num}\n'
else:
sh_content += f'#PBS -l nodes={node_name}:ppn={cpu_num}\n'
if cd_dir==1: if cd_dir==1:
sh_content += 'cd $PBS_O_WORKDIR\n' sh_content += 'cd $PBS_O_WORKDIR\n'
sh_content += command_line sh_content += command_line
@ -256,11 +261,13 @@ def make_sh_file_for_qsub(sh_filename='a', command_line='python a.py', cpu_num=1
f.write(sh_content) f.write(sh_content)
# 创建一个sh文件用于提交任务（Slurm） # 创建一个sh文件用于提交任务（Slurm）
def make_sh_file_for_sbatch(sh_filename='a', command_line='python a.py', cpu_num=1, task_name='task', cd_dir=0): def make_sh_file_for_sbatch(sh_filename='a', command_line='python a.py', cpu_num=1, task_name='task', cd_dir=0, sbatch_partition=0, partition_name='cpu48'):
sh_content = \ sh_content = \
'#!/bin/sh\n' \ '#!/bin/sh\n' \
+'#SBATCH --job-name='+task_name+'\n' \ +f'#SBATCH --job-name={task_name}\n'
+'#SBATCH --cpus-per-task='+str(cpu_num)+'\n' if sbatch_partition==1:
sh_content += f'#SBATCH --partition={partition_name}'
sh_content += f'#SBATCH --cpus-per-task={cpu_num}\n'
if cd_dir==1: if cd_dir==1:
sh_content += 'cd $PBS_O_WORKDIR\n' sh_content += 'cd $PBS_O_WORKDIR\n'
sh_content += command_line sh_content += command_line
@ -271,10 +278,10 @@ def make_sh_file_for_sbatch(sh_filename='a', command_line='python a.py', cpu_num
def make_sh_file_for_bsub(sh_filename='a', command_line='python a.py', cpu_num=1, task_name='task', cd_dir=0, bsub_q=0, queue_name='score'): def make_sh_file_for_bsub(sh_filename='a', command_line='python a.py', cpu_num=1, task_name='task', cd_dir=0, bsub_q=0, queue_name='score'):
sh_content = \ sh_content = \
'#!/bin/sh\n' \ '#!/bin/sh\n' \
+'#BSUB -J '+task_name+'\n' \ +f'#BSUB -J {task_name}\n'
+'#BSUB -n '+str(cpu_num)+'\n'
if bsub_q==1: if bsub_q==1:
sh_content += '#BSUB -q '+queue_name+'\n' sh_content += f'#BSUB -q {queue_name}\n'
sh_content += f'#BSUB -n {cpu_num}\n'
if cd_dir==1: if cd_dir==1:
sh_content += 'cd $PBS_O_WORKDIR\n' sh_content += 'cd $PBS_O_WORKDIR\n'
sh_content += command_line sh_content += command_line